Useful Tools and Protocols

Useful Tools and Protocols

csSAM

csSAM is a software for deconvolution of gene expression data. It implements methods described in Shen-Orr et al. Nature Methods April 2010

csSAM is available as an R package or as a Microsoft Excel Add-in.

csSAM Excel Add-In

Academic users: Download a copy of csSAM Excel here

Commercial users: Please contact Imelda Oropeza  ( imelda at stanford dot edu ) at Stanford's Office of Technology and Licensing for a commercial license of the csSAM Excel add-in. Please do not contact Imelda Oropeza about downloading, technical questions etc. All she handles is commercial licensing!

R package

Download the latest csSAM package (V1.2) for Windows or Source code (Mac/Unix/Linux)

Downloads
Links